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All rats underwent an abdominal CT scan before and at 4, 8, and 12 weeks after the start of CDAA feeding and/or rifaximin/L-carnitine treatment using CosmoScan FX (Rigaku Corporation) as previously described (26)
After batch correction and dimensionality reduction, cells from different samples were projected into a shared UMAP space rather than being separated only by sample origin, suggesting that the main structure of the dataset was driven by biological cell identity rather than technical batch effects ( Figure 6B )
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